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2011

Improving Human Genome Reference Assemblies

publication Evidence: moderate

Author Information

Author(s): Deanna M. Church, Valerie A. Schneider, Tina Graves, Katherine Auger, Fiona Cunningham, Nathan Bouk, Hsiu-Chuan Chen, Richa Agarwala, William M. McLaren, Graham R.S. Ritchie, Derek Albracht, Milinn Kremitzki, Susan Rock, Holland Kotkiewicz, Colin Kremitzki, Aye Wollam, Lee Trani, Lucinda Fulton, Robert Fulton, Lucy Matthews, Siobhan Whitehead, Will Chow, James Torrance, Matthew Dunn, Glenn Harden, Glen Threadgold, Jonathan Wood, Joanna Collins, Paul Heath, Guy Griffiths, Sarah Pelan, Darren Grafham, Evan E. Eichler, George Weinstock, Elaine R. Mardis, Richard K. Wilson, Kerstin Howe, Paul Flicek, Tim Hubbard

Primary Institution: National Center for Biotechnology Information

Hypothesis

The Genome Reference Consortium (GRC) aims to enhance the quality of human genome assemblies to better represent genomic diversity.

Conclusion

The GRC has made significant advancements in improving the human reference genome assembly, which is crucial for clinical and personal genomics.

Supporting Evidence

  • The GRC aims to provide high quality genome assemblies for better clinical applications.
  • Advances in technology have increased the number of sequenced human genomes.
  • The GRC has developed a system to track individual regions under review.
  • Continued improvement of the human reference assembly is critical for personal genomics.
  • Genome patches allow timely access to genome improvements without frequent changes to the coordinate system.

Takeaway

Scientists are working to make a better map of our DNA so that doctors can understand diseases and treatments more easily.

Methodology

The GRC established common tools and standard operating procedures for genome assembly and developed a system to track regions under review.

Limitations

The human reference assembly still contains gaps and may not fully represent complex genomic regions.

Digital Object Identifier (DOI)

10.1371/journal.pbio.1001091

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