Arabidopsis Gene Family Profiler (aGFP) – A User-Friendly Transcriptomic Database
Author Information
Author(s): Dupl'áková Nikoleta, Reňák David, Hovanec Patrik, Honysová Barbora, Twell David, Honys David
Primary Institution: Laboratory of Pollen Biology, Institute of Experimental Botany ASCR v.v.i.
Conclusion
The Arabidopsis Gene Family Profiler allows users to analyze and visualize gene expression data effectively.
Supporting Evidence
- The database provides access to a large collection of normalized Affymetrix ATH1 microarray datasets.
- It allows users to visualize expression patterns of individual genes and gene families.
- The aGFP database includes features for keyword search and interactive visualization.
Takeaway
This study created a website that helps people see how genes in plants are expressed at different times and in different parts of the plant.
Methodology
The database was constructed using data from Affymetrix ATH1 microarrays and includes various normalization algorithms.
Limitations
The database only includes data from experiments using Affymetrix ATH1 whole genome arrays with at least two biological replicates.
Digital Object Identifier (DOI)
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