Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing
2011

Studying Snake Venom Glands in Costa Rica

Sample size: 8 publication Evidence: moderate

Author Information

Author(s): Durban Jordi, Juárez Paula, Angulo Yamileth, Lomonte Bruno, Flores-Diaz Marietta, Alape-Girón Alberto, Sasa Mahmood, Sanz Libia, Gutiérrez José M, Dopazo Joaquín, Conesa Ana, Calvete Juan J

Primary Institution: Consejo Superior de Investigaciones Científicas, Valencia, Spain

Hypothesis

What are the molecular mechanisms and evolutionary forces that underlie the pharmacological potential of snake venoms?

Conclusion

The study reveals taxon-specific trends in the formulation of the venom arsenal of Costa Rican snakes.

Supporting Evidence

  • 100,394 out of 330,010 masked reads produced significant hits in available databases.
  • 62,433 reads displayed similarity to documented venom proteins.
  • Strong discrepancies were observed between transcriptome-computed and proteome-gathered toxin compositions.
  • Individual mRNA species may be translationally controlled in a species-dependent manner.
  • Reads encoding Kazal-type inhibitor-like proteins were uniquely found in Bothriechis schlegelii and B. lateralis.

Takeaway

Scientists looked at the venom of different snakes to understand how their toxins work and how they might help in medicine.

Methodology

The study used high-throughput 454 pyrosequencing to analyze the venom gland transcriptomes of eight snake species.

Potential Biases

Potential biases in cDNA library construction may affect the representation of certain transcripts.

Limitations

The average length of reads and low coverage per contig limited the generation of full-length gene sequences.

Participant Demographics

The study focused on eight species of Costa Rican pitvipers.

Digital Object Identifier (DOI)

10.1186/1471-2164-12-259

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