Genome-Wide Association Analyses Identify SPOCK as a Key Novel Gene Underlying Age at Menarche
2009

Identifying the SPOCK Gene's Role in Age at Menarche

Sample size: 477 publication 10 minutes Evidence: high

Author Information

Author(s): Liu Yao-Zhong, Guo Yan-Fang, Wang Liang, Tan Li-Jun, Liu Xiao-Gang, Pei Yu-Fang, Yan Han, Xiong Dong-Hai, Deng Fei-Yan, Yu Na, Zhang Yin-Ping, Zhang Lei, Lei Shu-Feng, Chen Xiang-Ding, Liu Hong-Bin, Zhu Xue-Zhen, Levy Shawn, Papasian Christopher J., Drees Betty M., Hamilton James J., Recker Robert R., Deng Hong-Wen

Primary Institution: University of Missouri Kansas City

Hypothesis

What genetic factors influence the age at menarche in women?

Conclusion

The study identified the SPOCK gene as a key factor influencing the age at menarche, validated across different ethnic groups.

Supporting Evidence

  • The SPOCK gene had seven SNPs associated with age at menarche with a genome-wide false discovery rate of q<0.05.
  • SNPs rs13357391 and rs1859345 were replicated in all three cohorts.
  • The study included a total of 477 Caucasian women in the GWAS and 2,143 women in replication cohorts.
  • Functional relevance of SPOCK was supported by its role in inhibiting MMP-2, a factor involved in menstrual cycles.

Takeaway

Scientists found a gene called SPOCK that helps determine when girls start their periods, and this was shown to be true in different groups of women.

Methodology

A genome-wide association study (GWAS) was conducted analyzing about 380,000 SNPs in 477 Caucasian women, followed by replication in additional cohorts.

Potential Biases

Potential recall bias in self-reported age at menarche data.

Limitations

The small sample size of the GWAS cohort may limit the statistical power to identify more genes related to age at menarche.

Participant Demographics

Cohorts included Caucasian women and one Chinese cohort, all females.

Statistical Information

P-Value

5.19×10−5

Statistical Significance

p<0.05

Digital Object Identifier (DOI)

10.1371/journal.pgen.1000420

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