Genetic Variation and Population Substructure in Outbred CD-1 Mice: Implications for Genome-Wide Association Studies
2009

Genetic Variation in CD-1 Mice

Sample size: 245 publication Evidence: moderate

Author Information

Author(s): Aldinger Kimberly A., Sokoloff Greta, Rosenberg David M., Palmer Abraham A., Millen Kathleen J.

Primary Institution: The University of Chicago

Hypothesis

What is the degree of genetic variation present in outbred CD-1 mice?

Conclusion

CD-1 mice exhibit significant genetic variation and population substructure, making them suitable for genetic studies.

Supporting Evidence

  • CD-1 mice show patterns of genetic variation similar to those found in human populations.
  • Population substructure was identified among CD-1 mice from different breeding facilities.
  • CD-1 mice are polymorphic at a significant number of loci.

Takeaway

CD-1 mice are like a big family with lots of different traits, which makes them useful for studying genetics.

Methodology

The study involved genotyping CD-1 mice using various SNP panels to assess genetic diversity and population structure.

Potential Biases

Potential bias due to population substructure among CD-1 mice from different breeding facilities.

Limitations

The SNP panels used were not selected for their informativeness in CD-1 mice, which may have affected the results.

Participant Demographics

CD-1 mice from multiple breeding facilities including North Carolina, Michigan, and New York.

Digital Object Identifier (DOI)

10.1371/journal.pone.0004729

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